SRA of Lacticaseibacillus rhamnosus strain:LB C25 - SRA

SRX24306883: SRA of Lacticaseibacillus rhamnosus strain:LB C25
1 ILLUMINA (Illumina NovaSeq 6000) run: 6.2M spots, 2G bases, 584.3Mb downloads

Design: Genomic libraries were prepared following the manufacturer's protocol for the QIAseq FX DNA Library Kit (QIAGEN, Hilden, Germany), with slight modifications. Specifically, 5 ng of DNA was utilized as the input, Subsequently, the libraries underwent sequencing on the Illumina Novaseq 6000 platform, employing a 391 bp paired-end read protocol. To ensure fidelity during amplification, HiFi PCR Master Mix was employed. The amplified libraries were then subjected to analysis using the high-sensitivity D1000 ScreenTape on the TapeStation 4150 (Agilent Technologies).

Submitted by: National Dairy Research Institute, Karnal, Haryana, India

Study: Lacticaseibacillus rhamnosus strain:LB C25 Genome sequencing and assembly

PRJNA966947 • SRP502720 • All experiments • All runs

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The relevance of L. rhamnosus whole-genome sequencing lies in its potential to provide insights into the genetic basis of its probiotic properties, as well as its interactions with the host and other members of the gut microbiota. Specifically, WGS can provide information on the presence of genes involved in the production of bioactive molecules, adhesion to host cells, and modulation of the immune system.

Sample:

SAMN34568646 • SRS21069656 • All experiments • All runs

Organism: Lacticaseibacillus rhamnosus

Library:

Name: 9c51d0054718c7292aac0dfd3daa58dd, 7ad4cf809176a2833094c39d42ee96c2

Instrument: Illumina NovaSeq 6000

Strategy: WGS

Source: GENOMIC

Selection: PCR

Layout: PAIRED

Runs: 1 run, 6.2M spots, 2G bases, 584.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR28740973	6,185,436	2G	584.3Mb	2024-04-19

ID:: 32619617

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Sequence Read Archive

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